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My WorkSphere: Integrative work environment for grid-unaware biomedical researchers and applications

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dc.contributor.author Arzberger, Peter W.
dc.contributor.author Ding, Zhaohui
dc.contributor.author Li, Wilfred W.
dc.contributor.author Luo, Yuan
dc.contributor.author Misleh, Chris
dc.contributor.author Tatabe, Osamu
dc.contributor.author Wei, Xiaohui
dc.date.accessioned 2008-11-05T17:11:53Z
dc.date.available 2008-11-05T17:11:53Z
dc.date.issued 2006
dc.identifier.uri http://hdl.handle.net/1850/7347
dc.description.abstract In order to deliver cyberinfrastructure to the general scientific and biomedical research community, transparent access and ease of use are of critical importance. Applications in systematic modeling of biological processes across scales of time and length demand more and more sophisticated algorithms and larger and longer simulations. The increased level of sophistication requires that cyberinfrastructure developers either work closely with the applications scientists, or develop middleware that flattens the learning curve for these scientists to use the grid willingly and transparently. Many life sciences researchers prefer to run applications in the grid environment without modifications, and without knowledge of specific computational resources being utilized. Here we report the latest advances in the use of Gfarm-FUSE (Grid Data Farm-Filesystem in UserSpaceE) as a computational data grid, with CSF4 (Community Scheduler Framework 4) as the metascheduler, through a GridSphere portal based environment, termed My WorkSphere. We describe the design and performance of this transparent grid computing environment using bioinformatics and computational biology applications as examples. All the components developed or utilized are open source and available freely.
dc.description.sponsorship ASM, IEEE en_US
dc.language.iso en
dc.relation RIT Scholars content from RIT Digital Media Library has moved from http://ritdml.rit.edu/handle/1850/7347 to RIT Scholar Works http://scholarworks.rit.edu/article/978, please update your feeds & links!
dc.subject Bioinformatics en_US
dc.subject Community scheduler framework 4 en_US
dc.subject Gfarm en_US
dc.subject GridSphere en_US
dc.subject Metascheduler en_US
dc.title My WorkSphere: Integrative work environment for grid-unaware biomedical researchers and applications
dc.type Preprint

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  • International Workshop on Grid Computing Environments--Open Access (2006)
    The purpose of this Workshop is to bring together the community to discuss and foster the exchange of ideas for the development of tools, methodologies and frameworks to build Grid computing environments. Last year’s conference at SC05 focussed on tools for Grid Portals. This years conference will broaden the discussion to also include efforts of other tools that make the development and use of Grids more easily accessible from the desktop.

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